HsaALTA0001924-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000176444 | CLK2
Description
CDC like kinase 2 [Source:HGNC Symbol;Acc:HGNC:2069]
Coordinates
chr1:155269488-155270977:-
Coord C1 exon
chr1:155270808-155270977
Coord A exon
chr1:155269714-155269716
Coord C2 exon
chr1:155269488-155269713
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGGTATTTGTTATCCAACAGCAG
3' ss Score
6.13
Exon sequences
Seq C1 exon
ATGCCGCATCCTCGAAGGTACCACTCCTCAGAGCGAGGCAGCCGGGGGAGTTACCGTGAACACTATCGGAGCCGAAAGCATAAGCGACGAAGAAGTCGCTCCTGGTCAAGTAGTAGTGACCGGACACGACGGCGTCGGCGAGAGGACAGCTACCATGTCCGTTCTCGAAG
Seq A exon
CAG
Seq C2 exon
TTATGATGATCGTTCGTCCGACCGGAGGGTGTATGACCGGCGATACTGTGGCAGCTACAGACGCAACGATTATAGCCGGGATCGGGGAGATGCCTACTATGACACAGACTATCGGCATTCCTATGAATATCAGCGGGAGAACAGCAGTTACCGCAGCCAGCGCAGCAGCCGGAGGAAGCACAGACGGCGGAGGAGGCGCAGCCGGACATTTAGCCGCTCATCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176444-13-10,13-9-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.987 A=NA C2=0.791
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACCATGTCCGTTCTCGA
R:
ATCCCGGCTATAATCGTTGCG
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development