MmuALTA0004248-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000068917 | Clk2
Description
CDC-like kinase 2 [Source:MGI Symbol;Acc:MGI:1098669]
Coordinates
chr3:88970957-88972845:+
Coord C1 exon
chr3:88970957-88971126
Coord A exon
chr3:88972617-88972619
Coord C2 exon
chr3:88972620-88972845
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GGGTATTTGTTATCCAACAGCAG
3' ss Score
5.09
Exon sequences
Seq C1 exon
ATGCCCCATCCCCGAAGGTACCATTCCTCAGAGCGAGGTAGCCGGGGGAGTTACCACGAACACTATCAGAGCCGAAAGCATAAGCGAAGAAGAAGTCGCTCCTGGTCAAGTAGCAGTGACCGGACAAGGCGGCGGCGGAGGGAGGACAGCTACCACGTTCGGTCCCGAAG
Seq A exon
CAG
Seq C2 exon
CTATGATGACCATTCGTCCGATCGGCGGCTGTACGATCGGCGGTACTGTGGCAGCTACAGGCGCAATGACTACAGCCGGGACAGAGGGGAGGCTTACTACGACACAGACTTTCGGCAGTCCTATGAATACCATCGAGAGAACAGCAGTTACCGAAGCCAGCGCAGCAGCCGAAGGAAACACAGAAGGCGGAGGAGACGGAGCCGGACATTCAGCCGCTCATCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068917-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.672
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCTACCACGTTCGGTC
R:
TGTAGTCATTGCGCCTGTAGC
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: