BtaALTA0007719-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000019807 | COL27A1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MTP1]
Coordinates
chr8:105176889-105177280:+
Coord C1 exon
chr8:105176889-105176942
Coord A exon
NA
Coord C2 exon
chr8:105177227-105177280
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
CATCTCACCTTGGTTTGCAGGGG
3' ss Score
7.39
Exon sequences
Seq C1 exon
GGACAGGAGGGTGTACAAGGCCTCCGTGGAAATCCAGGCCAGCAGGGCCAACCC
Seq A exon
NA
Seq C2 exon
GGGCATCCGGGACCCCGGGGACGGCCGGGCCCCAAAGGATCGAAAGGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019807-47-41,47-40-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.4=100),PF0139113=Collagen=PU(9.5=44.4)
A:
NA
C2:
PF0139113=Collagen=PD(22.6=77.8),PF0139113=Collagen=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGGGTGTACAAGGCCTC
R:
CTTCCCCTTTCGATCCTTTGGG
Band lengths:
103-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development