BtaALTA0012143-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008994 | FPGS
Description
Bos taurus folylpolyglutamate synthase (FPGS), mRNA. [Source:RefSeq mRNA;Acc:NM_001024480]
Coordinates
chr11:98500132-98502967:+
Coord C1 exon
chr11:98500132-98500196
Coord A exon
chr11:98502921-98502939
Coord C2 exon
chr11:98502940-98502967
Length
19 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTG
5' ss Score
5.9
3' ss Seq
GACCCTGGTTCTTTCAACAGCTC
3' ss Score
9.08
Exon sequences
Seq C1 exon
GGCTCCACGTGTGCCTTCACTGAACGTATCCTCCGAAGCTATGGCCTGAAGACGGGGTTCTTTAG
Seq A exon
CTCTCCCCACCTGGTGCAG
Seq C2 exon
GTGCGTGAGCGGATCCGCATCAATGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008994-3-7,3-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(10.1=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(4.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTGCCTTCACTGAACGTA
R:
GCCCATTGATGCGGATCCG
Band lengths:
86-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development