HsaALTA0003462-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000136877 | FPGS
Description
folylpolyglutamate synthase [Source:HGNC Symbol;Acc:3824]
Coordinates
chr9:130566915-130569366:+
Coord C1 exon
chr9:130566915-130566979
Coord A exon
chr9:130569252-130569270
Coord C2 exon
chr9:130569271-130569366
Length
19 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTG
5' ss Score
5.9
3' ss Seq
GACCCCAGCTGTCCCGGCAGCTC
3' ss Score
4.62
Exon sequences
Seq C1 exon
GGCTCCACCTGTGCCTTCACGGAATGTATCCTCCGAAGCTATGGCCTGAAGACGGGATTCTTTAG
Seq A exon
CTCTCCCCACCTGGTGCAG
Seq C2 exon
GTTCGGGAGCGGATCCGCATCAATGGGCAGCCCATCAGTCCTGAGCTCTTCACCAAGTACTTCTGGCGCCTCTACCACCGGCTGGAGGAGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136877-8-17,8-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(11.7=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(21.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAAGCTATGGCCTGAAGA
R:
GCGCCAGAAGTACTTGGTGAA
Band lengths:
103-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)