MmuALTA0007389-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000009566 | Fpgs
Description
folylpolyglutamyl synthetase [Source:MGI Symbol;Acc:MGI:95576]
Coordinates
chr2:32543440-32546774:-
Coord C1 exon
chr2:32546710-32546774
Coord A exon
chr2:32543536-32543554
Coord C2 exon
chr2:32543440-32543535
Length
19 bp
Sequences
Splice sites
5' ss Seq
TAGGTACTG
5' ss Score
5.9
3' ss Seq
GACCCCAGGTCTCTCCACAGCTC
3' ss Score
5.51
Exon sequences
Seq C1 exon
GGCTCCACCTGTGCCTTCACCGAACGGATCCTGCGGAATTACGGCCTGAAGACCGGCTTCTTTAG
Seq A exon
CTCTCCTCACATGGTGCAG
Seq C2 exon
GTGCGGGAGCGGATTCGAATCAACGGGAAACCAATCAGCCCCGAGCTCTTCACCAAGCACTTCTGGTGCCTCTATAACCAGCTGGAGGAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009566-6-9,6-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(14.3=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(17.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGATCCTGCGGAATTACG
R:
AAGTGCTTGGTGAAGAGCTCG
Band lengths:
105-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: