DreALTA0012187-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000044809 | fpgs
Description
folylpolyglutamate synthase [Source:ZFIN;Acc:ZDB-GENE-040426-2781]
Coordinates
chr21:6014451-6015051:+
Coord C1 exon
chr21:6014451-6014515
Coord A exon
chr21:6014937-6014956
Coord C2 exon
chr21:6014957-6015051
Length
20 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTA
5' ss Score
7.26
3' ss Seq
TGCGTTGTTTTGATCTCCAGTTC
3' ss Score
7.93
Exon sequences
Seq C1 exon
GGATCAACATGTGCCTTCACAGAAAAGATTTTGAGAAACTATGGCTTCCGCACTGGATTCTACAG
Seq A exon
TTCTCCTCATTTGGTGCAAG
Seq C2 exon
TGAGAGAGCGGATCCGAATCAACGGTCAGCCAATAGGAAAAGAGCTTTTCACCAAATACTTCTGGCAAGTGTATGGACGACTGGAGGAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044809-4-6,4-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082457=Mur_ligase_M=FE(9.9=100)
A:
NA
C2:
PF082457=Mur_ligase_M=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTATGGCTTCCGCACTGG
R:
CCAGTCGTCCATACACTTGCC
Band lengths:
114-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]