BtaALTA0012245-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008926 | FUBP1
Description
Bos taurus far upstream element (FUSE) binding protein 1 (FUBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076846]
Coordinates
chr3:66972356-66972901:+
Coord C1 exon
chr3:66972356-66972395
Coord A exon
NA
Coord C2 exon
chr3:66972852-66972901
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
TTTCTGTCATTTCTTAGCAGGTC
3' ss Score
8.02
Exon sequences
Seq C1 exon
CTTTTGGAACACAGTTACCACCAATGCATCAGCAGCAAAG
Seq A exon
NA
Seq C2 exon
GTCTGTAATGACAGAAGAATACAAAGTTCCAGATGGAATGGTTGGATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008926-3-7,3-6-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.519
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001324=KH_1=PU(20.6=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGAACACAGTTACCACCA
R:
AAATCCAACCATTCCATCTGGA
Band lengths:
87-90
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development