HsaALTA0003495-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77967049-77967666:-
Coord C1 exon
chr1:77967627-77967666
Coord A exon
NA
Coord C2 exon
chr1:77967049-77967098
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAG
5' ss Score
7.98
3' ss Seq
TTTCTGTTATTTCTTAGCAGATC
3' ss Score
8.14
Exon sequences
Seq C1 exon
CTTTTGGAACACAGTTACCACCGATGCATCAGCAGCAAAG
Seq A exon
NA
Seq C2 exon
ATCTGTAATGACAGAAGAATACAAAGTTCCAGATGGAATGGTTGGATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613-11-8,11-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0001324=KH_1=PU(20.6=72.2)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAACACAGTTACCACCGA
R:
TGAATCCAACCATTCCATCTGGA
Band lengths:
87-90
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development