HsaEX6031729 @ hg38
Exon Skipping
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77967049-77968203:-
Coord C1 exon
chr1:77968165-77968203
Coord A exon
chr1:77967627-77967666
Coord C2 exon
chr1:77967049-77967098
Length
40 bp
Sequences
Splice sites
3' ss Seq
TTTATTTAATTTTTTGATAGCTT
3' ss Score
5.76
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
ATCAACCAGATGCTAAGAAAGTTGCTCCTCAAAATGACT
Seq A exon
CTTTTGGAACACAGTTACCACCGATGCATCAGCAGCAAAG
Seq C2 exon
ATCTGTAATGACAGAAGAATACAAAGTTCCAGATGGAATGGTTGGATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613-'10-8,'10-6,11-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.492
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001324=KH_1=PU(20.6=72.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGATGCTAAGAAAGTTGCTCC
R:
TGAATCCAACCATTCCATCTGGA
Band lengths:
85-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains