MmuEX6074753 @ mm9
Exon Skipping
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:151878556-151880848:+
Coord C1 exon
chr3:151878556-151878594
Coord A exon
chr3:151880373-151880412
Coord C2 exon
chr3:151880799-151880848
Length
40 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTCATTTTTTCGTAGCTT
3' ss Score
7.23
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
ATCAGCCAGATGCTAAGAAAGTACCTCCCCAAAATGACT
Seq A exon
CTTTTGGAGCACAGTTACCTCCAATGCATCAGCAGCAAAG
Seq C2 exon
ATCTGTAATGACAGAAGAATACAAAGTCCCAGATGGGATGGTCGGATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-'3-6,'3-4,4-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.504
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001324=KH_1=PU(20.6=72.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGATGCTAAGAAAGTACCTCC
R:
AAATCCGACCATCCCATCTGG
Band lengths:
84-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: