RnoEX6011951 @ rn6
Exon Skipping
Gene
ENSRNOG00000043370 | Fubp1
Description
far upstream element binding protein 1 [Source:RGD Symbol;Acc:1591892]
Coordinates
chr2:257431199-257432889:+
Coord C1 exon
chr2:257431199-257431237
Coord A exon
chr2:257432386-257432425
Coord C2 exon
chr2:257432840-257432889
Length
40 bp
Sequences
Splice sites
3' ss Seq
TTGTTTAAATTTTTTTACAGCTT
3' ss Score
8.79
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
ATCAACCAGATGCTAAGAAAGTACCTCCCCAAAATGATT
Seq A exon
CTTTTGGAGCACAGTTACCTCCAATGCATCAGCAACAAAG
Seq C2 exon
ATCTGTAATGACAGAAGAATACAAAGTTCCAGATGGAATGGTTGGATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043370-'6-9,'6-6,7-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001324=KH_1=PU(20.6=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGATGCTAAGAAAGTACCTCC
R:
AAATCCAACCATTCCATCTGGA
Band lengths:
84-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]