GgaEX6044516 @ galGal3
Exon Skipping
Gene
ENSGALG00000008939 | FUBP1
Description
NA
Coordinates
chr8:19594141-19595395:+
Coord C1 exon
chr8:19594141-19594179
Coord A exon
chr8:19594535-19594574
Coord C2 exon
chr8:19595346-19595395
Length
40 bp
Sequences
Splice sites
3' ss Seq
TCTCAAAATTTGCTTTATAGCTT
3' ss Score
7.11
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATCAACCAGATGCTAAGAAAGTTGCTCCTCAGAATGACT
Seq A exon
CTTTTGGAAATCAGCTACCACCAATGCATCAACAACAAAG
Seq C2 exon
GTCTGTGATGACAGAGGAGTACAAAGTTCCAGATGGAATGGTTGGATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939-'9-4,'9-3,10-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001324=KH_1=PU(20.6=72.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGATGCTAAGAAAGTTGCTCC
R:
AAATCCAACCATTCCATCTGGA
Band lengths:
84-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]