HsaEX6031729 @ hg19
Exon Skipping
Gene
ENSG00000162613 | FUBP1
Description
far upstream element (FUSE) binding protein 1 [Source:HGNC Symbol;Acc:4004]
Coordinates
chr1:78432733-78433887:-
Coord C1 exon
chr1:78433849-78433887
Coord A exon
chr1:78433311-78433350
Coord C2 exon
chr1:78432733-78432785
Length
40 bp
Sequences
Splice sites
3' ss Seq
TTTATTTAATTTTTTGATAGCTT
3' ss Score
5.76
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
ATCAACCAGATGCTAAGAAAGTTGCTCCTCAAAATGACT
Seq A exon
CTTTTGGAACACAGTTACCACCGATGCATCAGCAGCAAAG
Seq C2 exon
CAGATCTGTAATGACAGAAGAATACAAAGTTCCAGATGGAATGGTTGGATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613-'3-4,'3-3,4-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.524
Domain overlap (PFAM):
C1:
NO
A:
PF0001324=KH_1=PU(20.6=40.6)
C2:
PF0001324=KH_1=PU(20.6=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAACCAGATGCTAAGAAAGTTGC
R:
TGAATCCAACCATTCCATCTGGA
Band lengths:
92-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)