MmuEX6074753 @ mm10
Exon Skipping
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:152215592-152217884:+
Coord C1 exon
chr3:152215592-152215630
Coord A exon
chr3:152217409-152217448
Coord C2 exon
chr3:152217835-152217884
Length
40 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTCATTTTTTCGTAGCTT
3' ss Score
7.23
5' ss Seq
AAGGTATAG
5' ss Score
7.98
Exon sequences
Seq C1 exon
ATCAGCCAGATGCTAAGAAAGTACCTCCCCAAAATGACT
Seq A exon
CTTTTGGAGCACAGTTACCTCCAATGCATCAGCAGCAAAG
Seq C2 exon
ATCTGTAATGACAGAAGAATACAAAGTCCCAGATGGGATGGTCGGATTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-'13-12,'13-8,14-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.983 A=1.000 C2=0.506
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001324=KH_1=PU(20.6=72.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGATGCTAAGAAAGTACCTCC
R:
AAATCCGACCATCCCATCTGG
Band lengths:
84-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types