BtaALTA0012247-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100915246-100926668:+
Coord C1 exon
chr11:100915246-100915351
Coord A exon
chr11:100926635-100926637
Coord C2 exon
chr11:100926638-100926668
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCTCTTTCTCTTTGCCACAGTAG
3' ss Score
8
Exon sequences
Seq C1 exon
ATTGCTGCTAAAATTGACTCAATCCCTCACTTGAATAACTCCACACCTCTGGTGGACCCCTCAGTGTACGGCTACGGAGTGCAGAAGCGGCCCTTGGATGATGGAG
Seq A exon
TAG
Seq C2 exon
GTAACCAGTTAGGGGCCTTGGTACATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGGTGGACCCCTCAG
R:
CTTTGATGTACCAAGGCCCCT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development