HsaALTA1014244-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000107164 | FUBP3
Description
far upstream element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr9:130595483-130609987:+
Coord C1 exon
chr9:130595483-130595588
Coord A exon
chr9:130609954-130609956
Coord C2 exon
chr9:130609957-130609987
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCTCTTTCTCTTTGCCACAGTAG
3' ss Score
8
Exon sequences
Seq C1 exon
ATTGCTGCTAAAATTGATTCAATTCCTCACTTGAATAATTCCACACCTCTAGTGGACCCCTCAGTATATGGATACGGAGTACAAAAACGGCCCTTGGATGATGGAG
Seq A exon
TAG
Seq C2 exon
GTAACCAGTTAGGGGCCTTGGTACATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164-9-19,9-18-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCTAGTGGACCCCTCAG
R:
CTTTGATGTACCAAGGCCCCT
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains