MmuALTA0007431-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026843 | Fubp3
Description
far upstream element (FUSE) binding protein 3 [Source:MGI Symbol;Acc:MGI:2443699]
Coordinates
chr2:31583155-31592496:+
Coord C1 exon
chr2:31583155-31583260
Coord A exon
chr2:31592463-31592465
Coord C2 exon
chr2:31592466-31592496
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TCTCTTTCTCTTTGCCACAGTAG
3' ss Score
8
Exon sequences
Seq C1 exon
ATTGCTGCTAAAATCGATTCAATTCCTCACTTGAATAATTCCACACCTCTGGTGGACCCCTCAGTGTACGGATACGGAGTACAGAAGCGGGCCCTGGATGATGGAG
Seq A exon
TAG
Seq C2 exon
GTAACCAGTTAGGGGCCTTGGTACATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026843-5-7,5-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.072
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGGTGGACCCCTCAG
R:
CTTTGATGTACCAAGGCCCCT
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types