RnoALTA0015874-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009139 | Fubp3
Description
far upstream element binding protein 3 [Source:RGD Symbol;Acc:1307004]
Coordinates
chr3:10245480-10254098:-
Coord C1 exon
chr3:10253993-10254098
Coord A exon
chr3:10245511-10245513
Coord C2 exon
chr3:10245480-10245510
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TCTCTTTCTCTTTGCCACAGTAG
3' ss Score
8
Exon sequences
Seq C1 exon
ATTGCTGCTAAAATCGATTCAATTCCTCACTTGAATAATTCCACACCCCTGGTGGACCCCTCCGTGTACGGATACGGAGTACAGAAACGGCCCTTGGACGATGGAG
Seq A exon
TAG
Seq C2 exon
GTAACCAGTTAGGGGCCTTGGTACATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009139-5-6,5-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATAATTCCACACCCCTGGT
R:
ACCAAGGCCCCTAACTGGTTA
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]