BtaALTA0018819-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004073 | MTA3
Description
Bos taurus metastasis associated 1 family, member 3 (MTA3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101964]
Coordinates
chr11:25140941-25145768:+
Coord C1 exon
chr11:25140941-25140999
Coord A exon
chr11:25145644-25145646
Coord C2 exon
chr11:25145647-25145768
Length
3 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
ACTTTATATTTCATTGAAAGCAG
3' ss Score
2.42
Exon sequences
Seq C1 exon
AAACGTCTAAAGGCAGCAGAAGCTGAGAGTAAACTGAAACAAGTGTATATCCCAACTTA
Seq A exon
CAG
Seq C2 exon
CAAACCAAATCCCAACCAAATATCCACCAGCAATGGCAAACCTGGTGCTGTGAATGGAGCTGTGGGAACCACATTCCAGCCACAAAACCCTCTCCTCGGGCGAGCCTGTGAGAGCTGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004073-26-20,26-19-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.762
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032022=GATA=PU(13.2=11.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCTAAAGGCAGCAGAAGC
R:
GGTTTGCCATTGCTGGTGGAT
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development