GgaALTA1020471-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009925 | MTA3
Description
metastasis associated 1 family, member 3 [Source:HGNC Symbol;Acc:HGNC:23784]
Coordinates
chr3:23360027-23362233:+
Coord C1 exon
chr3:23360027-23360085
Coord A exon
chr3:23362109-23362138
Coord C2 exon
chr3:23362139-23362233
Length
30 bp
Sequences
Splice sites
5' ss Seq
CTAGTGAGT
5' ss Score
7.43
3' ss Seq
CTGACTTTTTTTTTTTAAAGTAA
3' ss Score
6.16
Exon sequences
Seq C1 exon
AAACGTCTGAAAGCAGCTGAAGCAGAAAGTAAATTGAAACAAGTATACATCCCCACCTA
Seq A exon
TAATAAACCAAATCCCAATCAAATATCCAG
Seq C2 exon
CAACAATGGGAAACCTGCTACAGTCAATGGAGCCATGGGAGCCTCTTACCAGGCACAAGCCTCACTAATAGGGAGGGCTTGTGAAAGCTGCTATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009925-29-38,29-37-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.767
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032022=GATA=PU(13.2=11.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAGCTGAAGCAGAAAGT
R:
GCCCTCCCTATTAGTGAGGCT
Band lengths:
128-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]