HsaALTA0005398-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000057935 | MTA3
Description
metastasis associated 1 family, member 3 [Source:HGNC Symbol;Acc:23784]
Coordinates
chr2:42924916-42931458:+
Coord C1 exon
chr2:42924916-42924974
Coord A exon
chr2:42931334-42931336
Coord C2 exon
chr2:42931337-42931458
Length
3 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
TATTTTAATTTCATTGAAAGCAG
3' ss Score
1.68
Exon sequences
Seq C1 exon
AAACGTCTAAAAGCAGCAGAAGCTGAGAGTAAACTGAAACAAGTATATATCCCAACCTA
Seq A exon
CAG
Seq C2 exon
CAAACCAAATCCCAACCAAATATCCACTAGTAATGGGAAGCCTGGTGCTGTGAATGGAGCTGTGGGGACCACGTTCCAGCCTCAGAATCCTCTCTTAGGGAGAGCCTGTGAGAGCTGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000057935-28-37,28-36-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.939
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF027039=Adeno_E1A=PU(23.9=66.7),PF0032022=GATA=PU(13.2=11.9)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCTAAAAGCAGCAGAAGC
R:
GCACCAGGCTTCCCATTACTA
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)