MmuALTA0011361-4/4 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000055817 | Mta3
Description
metastasis associated 3 [Source:MGI Symbol;Acc:MGI:2151172]
Coordinates
chr17:84183617-84188382:+
Coord C1 exon
chr17:84183617-84183675
Coord A exon
chr17:84188258-84188290
Coord C2 exon
chr17:84188291-84188382
Length
33 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
ACTTTACATTTCATTGAAAGCAG
3' ss Score
2.01
Exon sequences
Seq C1 exon
AAGCGCCTAAAGGCCGCAGAAGCCGAGAGCAAACTGAAACAAGTGTACATCCCGACTTA
Seq A exon
CAGCAAACCAAATCCCAACCAAATCTCCAGCAG
Seq C2 exon
CAACGGCAAGGCTGGCACTGTGAATGGAGCTGTGGGGACCCAGTTTCAGCCCCAGAGCGCCCTCCTAGGGCGAGCCTGCGAGAGCTGCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055817-23-17,23-16,23-15,23-14-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.997 A=NA C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0032022=GATA=PU(13.2=11.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGAGAGCAAACTGAAACAA
R:
TAGCAGCTCTCGCAGGCTC
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: