BtaALTA0018899-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000003116 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr12:34192825-34193507:+
Coord C1 exon
chr12:34192825-34192874
Coord A exon
chr12:34193307-34193433
Coord C2 exon
chr12:34193434-34193507
Length
127 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TGTACTTTCTCGGGGGTTAGGTG
3' ss Score
6.02
Exon sequences
Seq C1 exon
GTTTTAATAGAAAAAGATTGGATCTCCTTTGGACATAAGTTTTCAGAGAG
Seq A exon
GTGTGGCCATTTGGATGGTGACCCAAAGGAAGTCTCGCCGGTGTTTACTCAGTTCTTGGAGTGTGTGTGGCATTTGACCGAACAGTTTCCACAAGCCTTCGAGTTCAATGAAGCGTTTCTTCTTCAG
Seq C2 exon
ATCCATGAACATATCCATTCATGCCAGTTTGGAAACTTTATTGGGAATTGTCAGAAGGAAAGAGAAGAACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003116-18-12,18-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.7=100)
A:
NA
C2:
PF066029=Myotub-related=PD(19.2=97.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAAGATTGGATCTCCTTTGGACA
R:
TGAGTTCTTCTCTTTCCTTCTGACA
Band lengths:
114-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development