HsaALTA1030026-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000139505 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr13:25253764-25254434:-
Coord C1 exon
chr13:25254385-25254434
Coord A exon
chr13:25253838-25253964
Coord C2 exon
chr13:25253764-25253837
Length
127 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TATACTTTCTGTGGGGTTAGGTG
3' ss Score
6.74
Exon sequences
Seq C1 exon
GTTTTAATAGAAAAGGATTGGATCTCTTTTGGACATAAATTTTCAGAGAG
Seq A exon
GTGTGGCCAGTTGGATGGTGACCCAAAGGAAGTCTCACCAGTGTTTACTCAGTTCTTGGAATGTGTGTGGCATTTGACCGAACAGTTTCCACAAGCCTTTGAATTCAGTGAAGCATTTCTTCTTCAG
Seq C2 exon
ATCCATGAGCATATTCATTCATGCCAGTTTGGAAACTTCCTTGGAAATTGTCAGAAGGAAAGAGAAGAGCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139505-24-24,24-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.7=100)
A:
NA
C2:
PF066029=Myotub-related=PD(19.2=97.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGGATTGGATCTCTTTTGGACA
R:
TGAGCTCTTCTCTTTCCTTCTGAC
Band lengths:
114-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains