RnoALTA0024960-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000012918 | Mtmr6
Description
myotubularin related protein 6 [Source:RGD Symbol;Acc:1305378]
Coordinates
chr15:40591067-40591719:+
Coord C1 exon
chr15:40591067-40591116
Coord A exon
chr15:40591519-40591645
Coord C2 exon
chr15:40591646-40591719
Length
127 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
TGTGCTCTCTGGGGCTTTAGGTG
3' ss Score
8.19
Exon sequences
Seq C1 exon
GTTTTAATAGAAAAAGATTGGATATCATTTGGGCATAAATTTTCAGAGAG
Seq A exon
GTGTGGCCATTTGGATGGTGACCCAAAGGAAGTCTCACCAGTGTTTACTCAGTTCTTGGAGTGTGTATGGCATCTGACTGAGCAGTTCCCACAAGCCTTTGAGTTCAACGAAGCGTTTCTTCTTCAG
Seq C2 exon
ATCCATGAGCACATTCACTCATGCCAATTTGGGAACTTCCTTGGCAACTGTCAGAAGGAAAGAGAGGAACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012918-19-17,19-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.2=100)
A:
NA
C2:
PF066029=Myotub-related=PD(17.3=97.1),PF097894=DUF2353=PU(14.2=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAAGATTGGATATCATTTGGGCA
R:
TGAGTTCCTCTCTTTCCTTCTGACA
Band lengths:
114-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]