GgaALTA0008587-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000017112 | MTMR6
Description
NA
Coordinates
chr1:181405682-181406437:+
Coord C1 exon
chr1:181405682-181405731
Coord A exon
chr1:181406237-181406363
Coord C2 exon
chr1:181406364-181406437
Length
127 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
3' ss Seq
CGCATCTGTTCATGTTCCAGGTG
3' ss Score
9.79
Exon sequences
Seq C1 exon
GTCTTGATAGAGAAAGACTGGATTTCTTTCGGGCACAAGTTCTCTGACAG
Seq A exon
GTGCTGTCAGTTGGATGGTGATCCAAAAGAGATCTCGCCAGTGTTCACTCAGTTTTTAGAGAGTGTGTGGAATCTGACTGAGCAGTTCCCACAAGCCTTTGAGTATAATGAAGCTTTCCTCCTTCAG
Seq C2 exon
ATCCATGAACATGTCCACTCGTGCCAGTTTGGGAACTTCCTTGGAAACTGCCAAAAAGAACGAGAAGAACTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017112-12-12,12-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.7=100)
A:
NA
C2:
PF066029=Myotub-related=PD(19.2=97.1),PF097894=DUF2353=PU(12.0=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTGATAGAGAAAGACTGGATTTC
R:
CAGTTCTTCTCGTTCTTTTTGGCA
Band lengths:
122-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]