BtaALTA0020959-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004891 | OXNAD1
Description
Bos taurus oxidoreductase NAD-binding domain containing 1 (OXNAD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035090]
Coordinates
chr1:155017757-155020104:+
Coord C1 exon
chr1:155017757-155017805
Coord A exon
chr1:155019972-155019986
Coord C2 exon
chr1:155019987-155020104
Length
15 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
TGGAATGTTGTGACTTTGAGTTT
3' ss Score
-5.2
Exon sequences
Seq C1 exon
GCCAGCCAGCTGTACACTAACGGCTCCTAAACTCTCATGGACCTCTGAA
Seq A exon
TTTGCTGTCTCCCAG
Seq C2 exon
GAAGCACCATGGTGGTCGTGATCCCCAGGCTGCTGCGAGGCTCTCTGGGCGCCATCTGCACTCAGGCGGCTCTGCTGAGATCAACACCCAGTGCGTTTCGCTACCTCACTCGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004891-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.027
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCTCCTAAACTCTCATGGA
R:
GGTGTTGATCTCAGCAGAGCC
Band lengths:
118-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development