HsaALTA0006000-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000154814 | OXNAD1
Description
oxidoreductase NAD binding domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25128]
Coordinates
chr3:16269126-16271071:+
Coord C1 exon
chr3:16269126-16269275
Coord A exon
chr3:16270929-16270944
Coord C2 exon
chr3:16270945-16271071
Length
16 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
AAAACAATTTGAAATTTCAGTTT
3' ss Score
3.5
Exon sequences
Seq C1 exon
GAACTTTGTGAGAATTTTAATGCATGGAAAAGCTGTCCATGTTCCAACTGCTGTACATCCAAAAGTCTCAGTGTAATAGCAGGACCAAAATATTCTGTCAATCAGCTGACCATATACTTAATGACTCCTAAAATCTCGTGGACTTCTAAG
Seq A exon
TTTTCTGTTTGCCCAG
Seq C2 exon
AAAGCGCCATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCTTACTCTAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154814-2-6,2-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCAGTGTAATAGCAGGACCA
R:
ATCATAACAGCAGCACAGGCC
Band lengths:
118-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development