Special

MmuALTA0012639-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000021906 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:MGI Symbol;Acc:MGI:1916953]
Coordinates
chr14:32899035-32904862:+
Coord C1 exon
chr14:32899035-32899239
Coord A exon
chr14:32904807-32904821
Coord C2 exon
chr14:32904822-32904862
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
AGAACGGTTTTAAATTTCAGTTC
3' ss Score
5.17
Exon sequences
Seq C1 exon
GTGGAGTCTTGTCCTCCATAGCTGACTTCAGAGGACATTAAAAGAATTGGCGGAGGCTACGCCCTCTTGAAAGGGGGAATCATTGAGGCTCAGGGAGCCACACAGCGTCCTCTCCAGTTCTCGGCCCACAGCGCTCCTGCAATTGCGTTTCAGGCGACCTTGAACTCTGAGTGACTCTTGGCCTGTTATGAGTTCTTGCCTGCAG
Seq A exon
TTCCGTTTCCCCCAG
Seq C2 exon
GAAGCACCATGGCCCACGTTGCCTTGATTCCTGGCTTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021906-2-7,2-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000126372





     
                   









    
Main Skipping Isoform:
ENSMUSP00000022462





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000022462f1119A, ENSMUSP00000022462f1120A, ENSMUSP00000125791, ENSMUSP00000126731, ENSMUSP00000129545, ENSMUSP00000130215, ENSMUSP00000130998, ENSMUSP00000132162
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr3:16270927-16270928 
ALTERNATIVE
HsaALTA0006000-2/2
(OXNAD1)
Human
(hg19)
chr3:16312436-16312578 
ALTERNATIVE
HsaALTA0006000-2/2
(OXNAD1)
Rat
(rn6)
chr16:8212518-8212652 
ALTERNATIVE
RnoALTA0027803-2/2
(Oxnad1)
Cow
(bosTau6)
chr1:155019972-155020104 
LOW PSI
BtaALTA0020959-2/2
(OXNAD1)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCTCCTGCAATTGCGTTTCAG

				
R: 
GACAAGCCAGGAATCAAGGCA

				
Band lengths: 
113-128

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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