RnoALTA0027803-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000019760 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:RGD Symbol;Acc:1311534]
Coordinates
chr16:8207802-8212652:+
Coord C1 exon
chr16:8207802-8207902
Coord A exon
chr16:8212518-8212531
Coord C2 exon
chr16:8212532-8212652
Length
14 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
AAAATGATTTTAAATTTCAGTTC
3' ss Score
6.14
Exon sequences
Seq C1 exon
TCCTCTCCAGTCCTCCTCGACACACAGCGCTCCTGCAGTAGCGTTTCAGGCGACCTTGAGCTCTGAGTGACGCCTGGCCTGTTATGAGTTCCTGCCTGCAG
Seq A exon
TTCCATTTGCCCAG
Seq C2 exon
GCAGCACCATGGCCCATGTCTTGATTCCTGGGTTGTCTCGAGGCTCTGTGGGAGCCATCTGCACTCAGGCTGCTTCGTGGGCACTGCCTACCAGCACTCTGCGTTCCCTTACCTTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019760-2-2,2-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCAGTAGCGTTTCAGG
R:
CCAGGAATCAAGACATGGGCC
Band lengths:
103-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]