BtaALTA0021868-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000675 | PGS1
Description
Bos taurus phosphatidylglycerophosphate synthase 1 (PGS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046395]
Coordinates
chr19:54425932-54426933:-
Coord C1 exon
chr19:54426744-54426933
Coord A exon
chr19:54426053-54426110
Coord C2 exon
chr19:54425932-54426052
Length
58 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
3' ss Seq
TGCCGCTTTCCTCCTTGTAGTGC
3' ss Score
9.23
Exon sequences
Seq C1 exon
GAAGGAAGAACTCGCGCACCATGCTGCTCCCGCTCCTGCAGAGGTTTCCGGAACAGGTCCGCGTCTCGCTGTTCCACACACCCAACCTCCGCGGGCTCCTGCGGCTCCTCATCCCCGAGCGCTTCAACGAGACCATTGGCCTGCAGCACATCAAGGTGTACCTCTTCGACAACAACGTCATCCTCAGCGG
Seq A exon
TGCAAACCTGAGTGACTCCTACTTCACCAACCGGCAGGACCGCTACGTGTTCTTGCAG
Seq C2 exon
GACTGTCCCGAGATCGCCGACTTCTTCACGGAGCTGGTGGACGCAGTAGGGGACGTGTCCCTGCAGCTGCAGGGGGACGACACTGTGCAGATGGTCGAGGGGATGGTGCACCCTTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000675-18-9,18-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(39.1=100)
A:
NA
C2:
PF130911=PLDc_2=PD(22.4=59.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCACATCAAGGTGTACC
R:
CTCGACCATCTGCACAGTGTC
Band lengths:
148-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development