GgaALTA0003757-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000007181 | PGPS1_CHICK
Description
NA
Coordinates
chr18:9778590-9779295:-
Coord C1 exon
chr18:9779106-9779295
Coord A exon
chr18:9778711-9778768
Coord C2 exon
chr18:9778590-9778710
Length
58 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
ACTTTTCTTTTCTCTCCTAGTGC
3' ss Score
10.41
Exon sequences
Seq C1 exon
GAAGGAAGAATTCTCGAACAATGCTAATTCCACTGCTGCAGAGATTCCCCGAACAAGTGCGTGTCTCCCTTTTCCACACCCCAAACCTGCGTGGGCTTCTCAAACTCCTGATTCCAGAGCGTTTTAATGAGACCATTGGCCTGCAGCACATCAAGGTCTATCTCTTTGATGATAATGTCATCCTGAGCGG
Seq A exon
TGCAAACCTGAGTGATTTGTACTTCACCAATCGTCAGGACCGCTATGTTCTCCTGCAG
Seq C2 exon
GACTCTCCTGAGATTGCAGACTTCTTCACGGAGCTAGTGGATGCAATTGGAGATGTGTCTCTGCAGCTACAGCAAGATGATACAGTCCAGATGATGGAGGGGATGGTACACCCCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007181-5-6,5-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(38.9=100)
A:
NA
C2:
PF130911=PLDc_2=PD(22.8=60.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGGCTTCTCAAACTCCTG
R:
GCTCCGTGAAGAAGTCTGCAA
Band lengths:
135-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]