DreALTA0002440-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000075857 | PGS1
Description
phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:30029]
Coordinates
chr12:34127588-34133424:-
Coord C1 exon
chr12:34133235-34133424
Coord A exon
chr12:34127730-34127766
Coord C2 exon
chr12:34127588-34127729
Length
37 bp
Sequences
Splice sites
5' ss Seq
TGGGTGTGT
5' ss Score
3.3
3' ss Seq
TATGATATCATCTCATACAGGGC
3' ss Score
7.02
Exon sequences
Seq C1 exon
GTAAGCACAATTCCCGCACAATGTTACTGCCGCTCCTCCAGCGTTTCCCCGAGCAGATGAGAGTGTCGCTGTACCACACGCCAGACCTGCGAGGACTCCTGCGGCTCCTGGTACCTGAACGCTTCAATGAAACCATCGGCGTGCAGCACATCAAGGCATACCTTTTTGACAACAGTCTCATCATTAGTGG
Seq A exon
GGCCAATCTGAGCGACTCCTACTTCACCAATCGGCAG
Seq C2 exon
GATCGTTATGTTCTTCTGGAGGACTGCAAGGAAGTTGCTGATTTCTTTGCTGAACTGGTTGGAGCCGTGGGTGACGTGTCAATGCAGCTCCTGCCTGACAACAGTGTGGAGATGATGGAGGGAAGGGTGCATCCTTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075857-7-8,7-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(40.1=100)
A:
NA
C2:
PF130911=PLDc_2=PD(21.0=54.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGTACCTGAACGCTTCA
R:
ACTTCCTTGCAGTCCTCCAGA
Band lengths:
120-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]