BtaALTA0024296-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000039172 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr11:94103009-94122532:+
Coord C1 exon
chr11:94103009-94103082
Coord A exon
chr11:94122333-94122471
Coord C2 exon
chr11:94122472-94122532
Length
139 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGG
5' ss Score
6.91
3' ss Seq
TTATGGTTTTTGTTTTTCAGGCA
3' ss Score
10.08
Exon sequences
Seq C1 exon
GGCTGGGGAGGCCCAGGCGGCGGAGCCTCCGGGACGGCGAACGGCGGGCGGCGGAGGAGGAGACGGCGGGTCGG
Seq A exon
GCATTTTTAAAATATTTAATCATTCATGAGTTGAGCTTCATTCTTGAGTCATGGATGACAAGGCTTCTGTTGGAAAAATCAGTGTCTCCTCAGACTCTGTGTCTACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAG
Seq C2 exon
GCAAGGAGATGAGACACCATCTACAAATAATGGAAGTGATGATGAGAAAACAGGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039172-3-3,3-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.900
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development