RnoALTA0032770-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21706327-21721564:+
Coord C1 exon
chr3:21706327-21706427
Coord A exon
chr3:21721366-21721503
Coord C2 exon
chr3:21721504-21721564
Length
138 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCGG
5' ss Score
4.73
3' ss Seq
TTATGGTTTGTGTTTTTCAGGCA
3' ss Score
9.81
Exon sequences
Seq C1 exon
GCGGGCCGGAGGGCGGAAGGAGCCGCTTCACGTGAGCAGTGGGGTGGGCGGCGGGGAGGCCCTGGCGGCGTAACCTCCCGGACGGCGCTTGGCGACAGCAG
Seq A exon
GCATTTAAAAAATTTTAACCATTCATGAGTTGAGCCTCATTCTTGAGTTATGGATGACAAGGCCTCTGTTGGAAAAATCAGTGTCTCTTCAGACTCAGTGTCCACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAG
Seq C2 exon
GCAAGGAGATGAGACACCATCTACAAATAATGGGAGTGATGATGAGAAGACGGGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402-4-1,4-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.920
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAGCCGCTTCACGTG
R:
CTTGAGTCCCGTCTTCTCATCA
Band lengths:
147-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]