MmuALTA0014727-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000035437 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:MGI Symbol;Acc:MGI:2385139]
Coordinates
chr2:37443279-37469576:+
Coord C1 exon
chr2:37443279-37443456
Coord A exon
chr2:37469377-37469515
Coord C2 exon
chr2:37469516-37469576
Length
139 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TTATGGTTTTTGTTTTTCAGGCA
3' ss Score
10.08
Exon sequences
Seq C1 exon
GTGGGCGGGGCGAGGCCAGGGAATCGGGCTGCGGAGGGTCGGCTTCGTGAGCTCTGCTGCTTGTGGTTCTTCGGTAGAAGGCGGGCCCGAGCTCTCTTCTTCGCGGCTGCAGTCACGAAGTGCTCCCGCTGACCGTTGCCTGCATGGGCCTGAGCAGCCTGTCTGCGAACAAGCCGTG
Seq A exon
GCATTAAAAAAATATTTAACCATTCATGAGTTGAGCCTCATTCTTGAGTTATGGATGACAAGGCCTCTGTTGGAAAAATCAGTGTCTCATCAGACTCAGTGTCTACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAG
Seq C2 exon
GCAAGGAGATGAGACACCATCTACAAATAATGGGAGTGATGATGAGAAGACGGGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035437-0-6,0-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.920
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGCCAGGGAATCGGG
R:
TGAGTCCCGTCTTCTCATCATCA
Band lengths:
227-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types