HsaALTA0006933-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000011454 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:17155]
Coordinates
chr9:125703288-125719488:+
Coord C1 exon
chr9:125703288-125703372
Coord A exon
chr9:125719290-125719427
Coord C2 exon
chr9:125719428-125719488
Length
138 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGG
5' ss Score
6.91
3' ss Seq
TTATGGTTTTTGTTTTTCAGGCA
3' ss Score
10.08
Exon sequences
Seq C1 exon
GGGGACAGGGCGGTTTGGGAGGCCCAGGCGGCGGAGCCTCCGGGACGGCGAGCGGCGGGCGGCGGAGGAGGAGACGGCAGGTCGG
Seq A exon
GCATTAAAAAATATTTAATCATTCATGTGTTGAGACTCATTCTTGAGTTATGGATGACAAGGCTTCTGTTGGAAAAATCAGTGTCTCTTCAGACTCAGTATCTACTCTTAATAGTGAAGATTTTGTCTTGGTTTCCAG
Seq C2 exon
GCAAGGAGATGAGACACCATCTACAAATAATGGAAGTGATGATGAGAAAACAGGACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011454-2-6,2-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.920
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGGCGGTTTGGGAG
R:
TGAGTCCTGTTTTCTCATCATCACT
Band lengths:
141-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)