BtaALTA0024743-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57181254-57182860:-
Coord C1 exon
chr5:57182769-57182860
Coord A exon
chr5:57181344-57181349
Coord C2 exon
chr5:57181254-57181343
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TTTCACTTTTATTTCCATAGCAA
3' ss Score
8.72
Exon sequences
Seq C1 exon
GCTATGGCTTTGTGGACTTCGACAGTCCTTCAGCAGCACAGAAAGCAGTTACAGCACTGAAGGCCAGTGGTGTACAAGCGCAGATGGCAAAG
Seq A exon
CAACAG
Seq C2 exon
GAGCAGGACCCCACGAATTTGTACATCTCAAACCTCCCGCTGTCAATGGATGAGCAAGAACTGGAGGGAATGCTGAAGCCCTTTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830-14-9,14-8-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.377
Domain overlap (PFAM):
C1:
PF062597=Abhydrolase_8=FE(27.3=100),PF0007617=RRM_1=PD(38.8=83.9)
A:
NA
C2:
PF062597=Abhydrolase_8=PD(9.1=18.9),PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTTACAGCACTGAAGGC
R:
GACAGCGGGAGGTTTGAGATG
Band lengths:
93-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development