Special

MmuALTA0015001-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:127580451-127581670:-
Coord C1 exon
chr10:127580845-127581670
Coord A exon
chr10:127580603-127580608
Coord C2 exon
chr10:127580451-127580602
Length
6 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
TTTCACCTTCGTGTCCATAGCAA
3' ss Score
8.88
Exon sequences
Seq C1 exon
AAAAAGGGAAAGAAACGGAAGTTGAAAGTGGGATTAAGGTTGCTGAAAAGGACTGACTAAAGCAGTGTAATGATTGACAGGCTTGAAAACAGCTCTGGAGTGGGTGTTGTGCACACACCTGTGATCCCAGCACTTGGGAAGGAGACAGAAGGATCAGGAATTCAAAATCAAGCCCTTAGGCAGAACTGTCATTGAGCCCTCCAGGAACCTCCACCCTGCCCCTAGTGCAGCCTCTCCCTGGGGCTCCCAAACACCTTTGGGGTAAATCACTGCACAGCACACCCTGCCCTTTCTGTTTCCTTCCTGCTGCCCTCCCTGCTTCCCTCCCATCCGCCAGTGACCAGGTAGCCCCCTTAGCCGAGTCTGCTGTGGCAGAAGAGAGGGAGAGAAATCATTCTGAACTGTGGAGTTGACAAGTCAGGAGAAAGGAATCTAACCTCAGGGCCAGGCTGCAGGGCAAGAGGAAAACTTGTTCTGCCTGCTTCTTAAAGAGACAGCTG
Seq A exon
CAACAG
Seq C2 exon
GAGCAAGACCCTACAAACTTATACATCTCAAACCTCCCTCTGTCAATGGACGAGCAGGAACTGGAGGGGATGCTGAAGCCCTTTGGCCAGGTCATCTCTACTCGGATCCTTCGAGACACTAGTGGGGCCAGCAGAGGGGTCGGCTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043-12-12,12-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.340
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0007617=RRM_1=PU(65.7=83.0)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000089664





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000075585, ENSMUSP00000096742
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr12:56965480-56965481 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr5:57181254-57181349 
HIGH PSI
BtaALTA0024743-2/2
(RBMS2)
Chicken
(galGal4)
chr7:21243403-21243560 
HIGH PSI
GgaALTA1026809-1/2
(RBMS1)
Chicken
(galGal3)
chr7:23331975-23331976 
Zebrafish
(danRer10)
chr23:25830041-25830198 
HIGH PSI
DreALTA0022555-2/2
(rbms2b)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
CTGCAGGGCAAGAGGAAAACT

				
R: 
TCGTCCATTGACAGAGGGAGG

				
Band lengths: 
104-110

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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