DreALTA0022555-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000056150 | rbms2b
Description
RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]
Coordinates
chr23:25818959-25830198:+
Coord C1 exon
chr23:25818959-25819050
Coord A exon
chr23:25830041-25830046
Coord C2 exon
chr23:25830047-25830198
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ATACTTTTTGTTCTTTGCAGCAA
3' ss Score
9.85
Exon sequences
Seq C1 exon
GCTATGGCTTTGTGGATTTCGACAGCCCGGCCTCTGCACAGAAAGCAGTGACAGCGCTAAAGGCCAGTGGAGTTCAGGCTCAGATGGCAAAG
Seq A exon
CAACAG
Seq C2 exon
GAACAGGACCCCACCAATCTGTACATCTCCAATCTGCCTCTGTCTATGGACGAACAGGAGTTAGAGAGCATGCTCAAGCCCTTCAGCCAGGTCATCTCCACACGTATCTTACGGGACGCAAACGGCACCAGCCGCGGAGTGGGTTTCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056150-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=NA C2=0.377
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(38.8=83.9)
A:
NA
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGTTCAGGCTCAGATGG
R:
AGGGCTTGAGCATGCTCTCTA
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]