RnoALTA0033355-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000003076 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:RGD Symbol;Acc:1304813]
Coordinates
chr7:2563911-2566330:-
Coord C1 exon
chr7:2566239-2566330
Coord A exon
chr7:2564063-2564068
Coord C2 exon
chr7:2563911-2564062
Length
6 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TTTCACTCTCATGTTCATAGCAA
3' ss Score
6.64
Exon sequences
Seq C1 exon
GCTATGGCTTCGTGGACTTCGACAGTCCGTCATCAGCACAGAAGGCTGTAACTGCACTGAAAGCCAGTGGTGTGCAGGCACAAATGGCAAAG
Seq A exon
CAACAG
Seq C2 exon
GAGCAAGACCCTACAAATTTATACATCTCAAACCTCCCTCTGTCAATGGACGAGCAAGAGCTGGAGGGGATGCTGAAGCCCTTTGGCCAGGTTATCTCCACTCGGATCCTCCGAGACACCACTGGGGCCAGCAGAGGGGTCGGCTTTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003076-14-13,14-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=NA C2=0.311
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(38.8=83.9)
A:
NA
C2:
PF0007617=RRM_1=PU(65.7=83.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAAGCCAGTGGTGTGCAG
R:
GCTCTTGCTCGTCCATTGACA
Band lengths:
97-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]