BtaALTA0026351-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103954269-103954725:-
Coord C1 exon
chr11:103954527-103954725
Coord A exon
chr11:103954438-103954441
Coord C2 exon
chr11:103954269-103954437
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CGCTTTGTGCTCCCGAAGAGTCA
3' ss Score
-11.4
Exon sequences
Seq C1 exon
GCCCGAGAAATACGATGACCGCTACAGGTACGACCCCCGCTTCACCGGGAGCTTTGACGATGAGCCCGAGCCACCTCGGGACCCTTACGGGGAGGAGGTGGACCGGCGTAGTGAGCACAGCGAGCACTCGGCACGGAGCCTGCGCAGCGCGCCCAGCCTGCAGAGCCGCCGCAGCAGCTTCAGCGCCCACTCCCACCAG
Seq A exon
TCAG
Seq C2 exon
GTGTACCGGAGTCATAACGTGCCCTCCGGGTCCTATGAGGTGCCCCCTCCGCCGGGCTCCTTCCACGGTGATTACGCCTACGGCCCCTACGGGAGCGACTTCCATGGCGCACCAGGCTTTCCAGAGTACGGCTACCCCGCCGAGGCCAGCTGGCCCTCCGTGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933-11-9,11-8,11-7-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.940 A=NA C2=0.847
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGCGCCCACTCCCA
R:
CGTAATCACCGTGGAAGGAGC
Band lengths:
98-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development