MmuALTA0016019-3/4 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026924 | Sec16a
Description
SEC16 homolog A (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2139207]
Coordinates
chr2:26285597-26286112:-
Coord C1 exon
chr2:26285914-26286112
Coord A exon
chr2:26285642-26285769
Coord C2 exon
chr2:26285597-26285641
Length
128 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CTTGCTCTCTTTCCCAAGAGTCA
3' ss Score
-8.95
Exon sequences
Seq C1 exon
GCCTGAGAAATGTGATGATCACTGGAGGTATGACCCTCGCTTCACTGGGAGCTTCGACGATGACGCTGAGATCCACAGGGACCCCTATGGAGAAGAAGCAGACAGACGCAGCATCCACAGTGAGCACTCGGCACGGAGCCTGCGCAGCACTCACAGTCTGCCCAGCCGCCGCAGCAGCCTCAGCTCCCATTCACACCAG
Seq A exon
TCAGATTTACAGAAGCCACCATGTGACTGGCGGTTCCTTTGAGGCCCCTCATGCCCCAGGCTCATTTCATGGTGATTATGCCTATGGCACATATGCCAGCAATTTCAGCGGTGCCCATGGTTTTCCAG
Seq C2 exon
AGTACAGCTACCCTGCAGACACCTCCTGGCCTGCTGTGGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026924-9-12,9-11,9-10,9-9-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.687 A=NA C2=0.458
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATCACTGGAGGTATGACCCT
R:
CTCCACAGCAGGCCAGGA
Band lengths:
226-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: