BtaALTA0026720-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000006569 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr17:68310619-68313621:+
Coord C1 exon
chr17:68310619-68310651
Coord A exon
chr17:68313510-68313512
Coord C2 exon
chr17:68313513-68313621
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACCGGCTGTGTGTTCAGTAGCAG
3' ss Score
3.03
Exon sequences
Seq C1 exon
TTAATCAAGACAGCTTTGAACACGCCTTAGAAG
Seq A exon
CAG
Seq C2 exon
AAGCGGCAGCAGAGACATCTCTGGAAGGAGGAAACATGGCTCTGGCTATCTTCATCCCTGTCCTCATCATCTCCTTACTGCTGGGAGGAGCCTACATTTACATCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006569-14-21,14-20,14-19-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGCTTTGAACACGCCTT
R:
AGGAGATGATGAGGACAGGGA
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development