HsaALTA0007685-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000100095 | SEZ6L
Description
seizure related 6 homolog like [Source:HGNC Symbol;Acc:HGNC:10763]
Coordinates
chr22:26373451-26375689:+
Coord C1 exon
chr22:26373451-26373483
Coord A exon
chr22:26375578-26375580
Coord C2 exon
chr22:26375581-26375689
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTGGCTCCTGTGTTCAGTAGCAG
3' ss Score
2.2
Exon sequences
Seq C1 exon
TTAATCAAGACAGTTTTGAACATGCTTTAGAAG
Seq A exon
CAG
Seq C2 exon
AAGCGGCAGCAGAGACGTCGCTGGAAGGGGGGAACATGGCCCTGGCTATCTTCATCCCGGTCCTCATCATCTCCTTACTGCTGGGAGGAGCCTACATTTACATCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100095-25-35,25-34,25-33-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGACAGTTTTGAACATGCTT
R:
AAGGAGATGATGAGGACCGGG
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development