HsaALTA0007685-2/3 @ hg19
Alternative 3'ss
Gene
ENSG00000100095 | SEZ6L
Description
seizure related 6 homolog (mouse)-like [Source:HGNC Symbol;Acc:10763]
Coordinates
chr22:26769417-26771655:+
Coord C1 exon
chr22:26769417-26769449
Coord A exon
chr22:26771544-26771546
Coord C2 exon
chr22:26771547-26771655
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTGGCTCCTGTGTTCAGTAGCAG
3' ss Score
2.2
Exon sequences
Seq C1 exon
TTAATCAAGACAGTTTTGAACATGCTTTAGAAG
Seq A exon
CAG
Seq C2 exon
AAGCGGCAGCAGAGACGTCGCTGGAAGGGGGGAACATGGCCCTGGCTATCTTCATCCCGGTCCTCATCATCTCCTTACTGCTGGGAGGAGCCTACATTTACATCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100095-15-18,15-17,15-16-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGACAGTTTTGAACATGCTT
R:
AAGGAGATGATGAGGACCGGG
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)