RnoALTA0035915-2/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000025612 | Sez6l
Description
seizure related 6 homolog like [Source:RGD Symbol;Acc:1563628]
Coordinates
chr12:50234981-50237178:+
Coord C1 exon
chr12:50234981-50235013
Coord A exon
chr12:50237067-50237069
Coord C2 exon
chr12:50237070-50237178
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTGGTTTGTGTGCTTAGTAGCAG
3' ss Score
1.44
Exon sequences
Seq C1 exon
TTAACCAAGACAGTTTTGAACATGCGTTGGAAG
Seq A exon
CAG
Seq C2 exon
AAGCAGCAGCAGAGTCCTCACTGGAAGGCGGGAACATGGCCCTAGCCATCTTCATTCCGGTCCTTCTCATCTCCTTGCTACTGGGAGGAGCCTACATCTATGTCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025612-29-30,29-29,29-28,29-27-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGACAGTTTTGAACATGCGT
R:
AGGACCGGAATGAAGATGGCT
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]