BtaALTA0027353-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000016762 | SLC25A12
Description
Bos taurus solute carrier family 25 (mitochondrial carrier, Aralar), member 12 (SLC25A12), mRNA. [Source:RefSeq mRNA;Acc:NM_001101194]
Coordinates
chr2:24734117-24736431:+
Coord C1 exon
chr2:24734117-24734263
Coord A exon
chr2:24736405-24736408
Coord C2 exon
chr2:24736409-24736431
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TCTGTGTTGTCATTTCCTAGGCA
3' ss Score
9.7
Exon sequences
Seq C1 exon
GAACTACAGTTGGAACATGCAAGGCAAGCCTTTGCTCTCAAAGACAAAAGCAAAAGTGGCCTGATTTCTGGTCTGGATTTCAGTGACATTATGGTTACCATCCGGTCTCACATGCTCACTCCCTTCGTGGAGGAGAACTTAGTTTCA
Seq A exon
GCAG
Seq C2 exon
CCGGAGGAAGTATCTCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016762-11-17,11-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(30.6=61.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTCTGGATTTCAGTGACA
R:
TGGTGTGAGATACTTCCTCCGG
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development