HsaALTA0007869-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000115840 | SLC25A12
Description
solute carrier family 25 (mitochondrial carrier, Aralar), member 12 [Source:HGNC Symbol;Acc:10982]
Coordinates
chr2:172691349-172693777:-
Coord C1 exon
chr2:172693631-172693777
Coord A exon
chr2:172691372-172691375
Coord C2 exon
chr2:172691349-172691371
Length
4 bp
Sequences
Splice sites
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
3' ss Seq
TTTGTGTTGTCATTTTCTAGGCA
3' ss Score
10.15
Exon sequences
Seq C1 exon
GAGCTGCAATTGGAACATGCAAGACAAGCCTTTGCACTCAAAGACAAAAGCAAAAGTGGCATGATTTCTGGTCTGGATTTCAGTGACATCATGGTTACCATTAGATCTCACATGCTTACTCCTTTTGTGGAGGAGAACTTAGTTTCA
Seq A exon
GCAG
Seq C2 exon
CTGGAGGAAGTATCTCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115840-18-18,18-17-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(53.6=61.2)
A:
NA
C2:
PF134991=EF-hand_7=FE(28.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGTCTGGATTTCAGTGACA
R:
TGGTGTGAGATACTTCCTCCAG
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)